STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT99349.1UDP-N-acetylglucosamine 4-epimerase; Pfam matches to PF01370.16 Epimerase, and to PF01073.14 3Beta_HSD, and to PF02719.10 Polysacc_synt_2, and to PF04321.12 RmlD_sub_bind, and to PF07993.7 NAD_binding_4, and to PF13460.1 NAD_binding_10, and to PF00106.20 adh_short, and to PF05368.8 NmrA. (328 aa)    
Predicted Functional Partners:
ugd
UDP-glucose 6-dehydrogenase; Pfam matches to PF03721.9 UDPG_MGDP_dh_N, and to PF00984.14 UDPG_MGDP_dh, and to PF03720.10 UDPG_MGDP_dh_C, and to PF01210.18 NAD_Gly3P_dh_N.
  
 0.946
gne
UDP-GlcNAc/Glc 4-epimerase; Pfam matches to PF01370.16 Epimerase, and to PF04321.12 RmlD_sub_bind, and to PF01073.14 3Beta_HSD, and to PF02719.10 Polysacc_synt_2, and to PF07993.7 NAD_binding_4, and to PF13460.1 NAD_binding_10, and to PF00106.20 adh_short, and to PF05368.8 NmrA, and to PF01113.15 DapB_N; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
0.932
EAT99326.1
Pfam matches to PF01370.16 Epimerase, and to PF13460.1 NAD_binding_10, and to PF01073.14 3Beta_HSD, and to PF04321.12 RmlD_sub_bind, and to PF05368.8 NmrA, and to PF07993.7 NAD_binding_4.
  
  
 
0.923
galU
UTP--glucose-1-phosphate uridylyltransferase; Pfam match to PF00483.18 NTP_transferase.
 
  
 0.922
EAT99331.1
Asparagine synthase (glutamine-hydrolyzing); Pfam matches to PF00733.16 Asn_synthase, and to PF13537.1 GATase_7, and to PF13522.1 GATase_6, and to PF12481.3 DUF3700, and to PF00310.16 GATase_2.
 
    0.831
rpsB
Pfam match to PF00318.15 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family.
  
  0.826
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
  0.794
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.790
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.790
EAT99224.1
Oxidoreductase, Gfo/Idh/MocA family; Pfam matches to PF01408.17 GFO_IDH_MocA, and to PF02894.12 GFO_IDH_MocA_C.
 
  
 0.788
Your Current Organism:
Campylobacter concisus
NCBI taxonomy Id: 360104
Other names: C. concisus 13826, Campylobacter concisus 13826, Campylobacter concisus str. 13826, Campylobacter concisus strain 13826
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.