STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT97834.1Putative immunity protein; Pfam match to PF15588.1 Imm7. (116 aa)    
Predicted Functional Partners:
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.773
EAT97829.1
Putative membrane protein; Pfam match to PF04186.8 FxsA.
       0.768
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.768
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
       0.768
ispB
Octaprenyl-diphosphate synthase; Pfam match to PF00348.12 polyprenyl_synt; Belongs to the FPP/GGPP synthase family.
       0.768
EAT97806.3
Hypothetical protein.
       0.751
EAT97805.1
Putative protein (DUF2018 domain); Pfam match to PF09442.5 DUF2018.
       0.751
EAT97827.1
Putative protein, putative phosphoglycolate phosphatase; Pfam matches to PF13419.1 HAD_2, and to PF00702.21 Hydrolase, and to PF12710.2 HAD, and to PF13242.1 Hydrolase_like.
       0.601
EAT97818.1
Hypothetical protein.
       0.601
metY
O-acetylhomoserine sulfhydrylase; Pfam matches to PF01053.15 Cys_Met_Meta_PP, and to PF01041.12 DegT_DnrJ_EryC1, and to PF00155.16 Aminotran_1_2, and to PF00266.14 Aminotran_5.
       0.432
Your Current Organism:
Campylobacter concisus
NCBI taxonomy Id: 360104
Other names: C. concisus 13826, Campylobacter concisus 13826, Campylobacter concisus str. 13826, Campylobacter concisus strain 13826
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.