STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABS51720.1Methionine import ATP-binding protein MetN; Identified by match to protein family HMM PF00005. (243 aa)    
Predicted Functional Partners:
ABS52278.1
ABC transport system permease; Identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
 0.999
ABS51527.1
Putative ABC transport system periplasmic substrate-binding protein; Identified by match to protein family HMM PF02470.
 
 0.998
ABS52252.1
Conserved hypothetical protein.
  
 
 0.888
ABS52271.1
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
      0.884
ttg2D
Toluene tolerance protein Ttg2D; Identified by match to protein family HMM PF05494.
  
 
 0.872
ABS52361.1
Conserved hypothetical protein.
  
    0.830
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
       0.791
ABS51230.1
D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase); Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.771
cysS
cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.674
ABS51047.1
ABC-type multidrug transport system permease component; Identified by match to protein family HMM PF01061.
      0.627
Your Current Organism:
Campylobacter hominis
NCBI taxonomy Id: 360107
Other names: C. hominis ATCC BAA-381, Campylobacter hominis ATCC BAA-381, Campylobacter hominis str. ATCC BAA-381, Campylobacter hominis strain ATCC BAA-381
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