STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BON22_1537RNA polymerase I-specific transcription initiation factor RRN6. (740 aa)    
Predicted Functional Partners:
BON22_4199
Copper-transporting ATPase.
    
 0.962
BON22_3627
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5.
   
 
 0.949
BON22_0991
RNA polymerase I-specific transcription initiation factor RRN3.
    
 
 0.817
BON22_3402
DNA-directed RNA polymerase I subunit RPA43.
    
 
 0.668
BON22_0070
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
    
 0.649
BON22_0773
Cell surface superoxide dismutase [Cu-Zn] 6.
    
 0.649
BON22_1179
Uncharacterized protein.
   
   0.647
BON22_0900
DNA-directed RNA polymerase I subunit RPA34.
    
 
 0.633
BON22_2301
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 
 0.624
BON22_5298
TATA-box-binding protein.
    
 
 0.624
Your Current Organism:
Cyberlindnera fabianii
NCBI taxonomy Id: 36022
Other names: C. fabianii, CBS 5640, CCRC 21415, CCRC:21415, Candida fabianii, Cyberlindnera fabianii (Wick.) Minter 2009, Hansenula fabianii, JCM 3601, Lindnera fabianii, Pichia fabianii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.