STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12336.1Major facilitator superfamily. (490 aa)    
Predicted Functional Partners:
GAP12911.1
Hypothetical protein.
  
     0.624
GAP14740.1
Predicted NTPase.
  
     0.596
GAP14301.1
Hypothetical protein.
  
     0.569
GAP12337.1
rRNA methylase.
       0.526
GAP12931.1
Arabinose efflux permease.
  
     0.518
GAP15593.1
Small GTP-binding protein.
  
     0.502
GAP14767.1
Protein containg TPR repeat.
  
     0.479
GAP15195.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
  
     0.473
GAP14908.1
Protein containg FOG: GAF domain.
  
 
   0.470
GAP14016.1
Hypothetical protein.
  
     0.454
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.