STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12421.1Phosphate/sulphate permeases. (342 aa)    
Predicted Functional Partners:
GAP12420.1
Phosphate transport regulator.
 
  
 0.993
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
   
    0.730
GAP12415.1
lysyl-tRNA synthetase, class II.
   
    0.714
GAP12938.1
Di- and tricarboxylate transporter.
   
 
 0.533
GAP12819.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
     
 0.476
GAP14054.1
Fe-S-cluster-containing hydrogenase components 1.
  
  
 0.430
GAP14439.1
Glycine cleavage system T protein; Belongs to the GcvT family.
  
  
 0.420
GAP13882.1
Hemolysins.
 
   0.419
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
  
  
 0.418
GAP13293.1
polyphosphate:AMP phosphotransferase.
  
  
 0.415
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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