STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12542.1Transcriptional regulator, BadM/Rrf2 family. (142 aa)    
Predicted Functional Partners:
GAP14647.1
Cysteine sulfinate desulfinase/cysteine desulfurase.
  
 
 0.918
GAP12541.1
Hypothetical protein.
       0.721
GAP14945.1
SUF system FeS assembly protein, NifU family.
  
  
 0.678
GAP15423.1
nifU homolog.
  
  
 0.678
GAP15256.1
Dinucleotide-utilizing enzyme.
  
 
 0.602
GAP12540.1
Hypothetical protein.
       0.580
GAP12543.1
Predicted thioesterase.
       0.467
GAP14054.1
Fe-S-cluster-containing hydrogenase components 1.
  
  
 0.405
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.