STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12565.1Hypothetical protein. (285 aa)    
Predicted Functional Partners:
GAP13330.1
Uncharacterized NAD(FAD)-dependent dehydrogenase.
   
 0.931
GAP15256.1
Dinucleotide-utilizing enzyme.
  
 0.899
GAP14820.1
Rhodanese-related sulfurtransferase.
 
 0.820
GAP14106.1
Zn-dependent hydrolase, including glyoxylase.
  
  
 
0.814
GAP12564.1
Protein containg PAS domain S-box.
 
     0.807
GAP12562.1
Aminoglycoside N3'-acetyltransferase.
 
     0.746
GAP13400.1
Protein containg TPR repeat.
 
  
  0.743
GAP14128.1
Membrane proteins related to metalloendopeptidases.
  
     0.726
GAP15364.1
Beta-lactamase class A.
  
   
 0.722
GAP12561.1
Dehydrogenase.
   
  0.718
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.