STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12574.1D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55. (274 aa)    
Predicted Functional Partners:
GAP15801.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
  
 0.540
GAP12573.1
Acetyltransferases.
       0.538
GAP12575.1
Acetyltransferase.
 
     0.525
GAP12572.1
N-acetylglutamate synthase.
       0.490
GAP13744.1
Beta-lactamase class C and other penicillin binding proteins.
  
     0.478
GAP13735.1
Uncharacterized protein conserved in bacteria.
  
     0.429
GAP12298.1
L-alanine-DL-glutamate epimerase.
 
    0.417
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.414
GAP15550.1
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
 
     0.401
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.