STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12620.1Nitroreductase. (259 aa)    
Predicted Functional Partners:
GAP15467.1
birA, biotin-[acetyl-CoA-carboxylase] ligase region.
  
    0.812
GAP13445.1
acyl-CoA synthetase.
   
   0.800
GAP16096.1
acyl-CoA synthetase.
   
   0.800
GAP15256.1
Dinucleotide-utilizing enzyme.
    
 0.793
GAP13513.1
Nitroreductase.
  
     0.691
GAP15610.1
Nitroreductase.
  
     0.608
GAP12631.1
ABC-type multidrug transport system, ATPase component.
  
  
 0.586
GAP12443.1
DinB superfamily.
  
    0.575
GAP12682.1
Lactoylglutathione lyase.
  
    0.575
GAP13301.1
Short-chain alcohol dehydrogenase of unknown specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.540
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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