STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12666.1Sugar phosphate isomerase/epimerase. (304 aa)    
Predicted Functional Partners:
GAP12667.1
Predicted dehydrogenase.
 
 
 0.982
GAP12672.1
Predicted dehydrogenase.
 
 
 0.930
GAP15239.1
Predicted dehydrogenase.
 
 
 0.861
GAP15798.1
Predicted dehydrogenase.
 
 
 0.853
GAP15957.1
Predicted dehydrogenase.
 
 
 0.847
GAP15024.1
Predicted dehydrogenase.
 
 
 0.830
GAP13782.1
Predicted dehydrogenase.
 
 
 0.825
GAP13147.1
Predicted dehydrogenase.
 
 
 0.822
GAP12673.1
Sugar phosphate isomerase/epimerase.
 
     0.766
GAP12670.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
    0.750
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.