STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12686.1Phenylpropionate dioxygenase. (325 aa)    
Predicted Functional Partners:
GAP14439.1
Glycine cleavage system T protein; Belongs to the GcvT family.
  
 
 0.704
GAP15606.1
Polyketide synthase module.
  
 
 0.696
GAP13330.1
Uncharacterized NAD(FAD)-dependent dehydrogenase.
  
 
 0.694
GAP12799.1
Dehydrogenase.
 
 
 0.693
GAP15239.1
Predicted dehydrogenase.
    
 0.680
GAP14298.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
     
 0.660
GAP14318.1
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
     
 0.660
GAP15386.1
2-polyprenylphenol hydroxylase.
  
 
 0.649
GAP15940.1
Sulfide dehydrogenase (flavoprotein) subunit SudB.
  
 
 0.649
GAP13308.1
Uncharacterized conserved protein.
    
 0.630
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.