STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12923.1Arabinose efflux permease. (394 aa)    
Predicted Functional Partners:
GAP12922.1
Predicted sugar phosphatases of the HAD superfamily.
       0.741
GAP14670.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
  
 
 0.665
GAP14054.1
Fe-S-cluster-containing hydrogenase components 1.
     
 0.550
GAP12924.1
Beta-lactamase class C and other penicillin binding proteins.
       0.543
GAP14689.1
Arabinose efflux permease.
  
     0.492
GAP12921.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3.
       0.489
GAP14140.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.488
GAP14250.1
Arabinose efflux permease.
  
     0.480
GAP15401.1
Homoserine dehydrogenase.
   
  0.465
GAP15995.1
Arabinose efflux permease.
  
  
  0.452
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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