STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP12970.1Transcriptional regulator, TetR family. (198 aa)    
Predicted Functional Partners:
GAP12969.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.817
GAP12968.1
Short-chain dehydrogenase of various substrate specificities; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.779
GAP15606.1
Polyketide synthase module.
    
 0.616
GAP12711.1
Transcriptional regulator.
  
     0.548
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.495
GAP14295.1
DNA-binding transcriptional activator of the SARP family.
  
   
 0.443
GAP14910.1
Histidine kinase.
  
 
 
 0.432
GAP12971.1
Hypothetical protein.
       0.429
GAP12972.1
Protein containg nucleotidyltransferase domain.
       0.429
GAP12686.1
Phenylpropionate dioxygenase.
     
 0.418
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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