STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13003.1Bacterial extracellular solute-binding proteins, family 5 Middle. (557 aa)    
Predicted Functional Partners:
GAP13004.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.946
GAP13005.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
  0.933
GAP15802.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.892
GAP13686.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.890
GAP12290.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.880
GAP15801.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
  0.873
GAP13736.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.861
GAP13662.1
Bacterial extracellular solute-binding proteins, family 5 Middle.
 
  
  0.857
GAP12289.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
  0.847
GAP13685.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
  0.846
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.