STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13023.14-amino-4-deoxy-L-arabinose transferase. (525 aa)    
Predicted Functional Partners:
GAP15359.1
Acetyltransferases.
  
    0.567
GAP15361.1
Dolichyl-phosphate-mannose-protein mannosyltransferase/NHL repeat.
 
  
  0.527
GAP15947.1
Lauroyl/myristoyl acyltransferase.
    
 0.491
GAP15958.1
Protein containg repeat domain.
  
     0.483
GAP12899.1
Hypothetical protein.
  
     0.470
GAP14675.1
Hypothetical protein.
    
  0.452
GAP13934.1
Membrane protein.
 
     0.451
GAP13442.1
Glycosyltransferase.
  
 
  0.449
GAP13479.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.420
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.410
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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