STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13044.1Glycyl-radical enzyme activating protein family. (301 aa)    
Predicted Functional Partners:
GAP13045.1
Pyruvate-formate lyase.
  
 0.996
GAP15742.1
Acetaldehyde dehydrogenase.
 
  
 0.740
GAP14547.1
Organic radical activating enzyme; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
  
     0.728
GAP13695.1
Alcohol dehydrogenase, class IV.
 
  
 0.608
GAP14859.1
Thioredoxin reductase.
  
  
 0.608
GAP14762.1
Alcohol dehydrogenase, class IV.
 
  
 0.584
GAP12819.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
     
 0.564
GAP15941.1
Alcohol dehydrogenase, class IV.
  
  
 0.526
GAP16148.1
Uncharacterized NAD(FAD)-dependent dehydrogenase.
   
  
 0.428
GAP13046.1
Methylase.
       0.414
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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