STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13117.1Uncharacterized vancomycin resistance protein. (610 aa)    
Predicted Functional Partners:
GAP14459.1
Bacterial capsule synthesis protein PGA_cap.
  
     0.703
GAP14458.1
Bacterial capsule synthesis protein PGA_cap.
  
     0.684
GAP13827.1
Hypothetical protein.
  
     0.677
GAP15587.1
Uncharacterized protein conserved in bacteria.
 
     0.643
GAP13423.1
Transcriptional attenuator, LytR family.
 
     0.639
GAP14380.1
Protein containg cell envelope-related function transcriptional attenuator common domain.
 
     0.598
GAP12303.1
Transcriptional regulator.
 
     0.574
GAP14747.1
Uncharacterized protein conserved in bacteria.
  
     0.516
GAP15200.1
Hypothetical protein.
  
     0.510
GAP14465.1
Uncharacterized protein conserved in bacteria.
  
     0.509
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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