STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13143.1Transcriptional regulator, GntR family. (277 aa)    
Predicted Functional Partners:
GAP13144.1
L-fucose isomerase.
 
     0.801
GAP12819.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
    
  0.711
GAP13145.1
Sugar phosphate isomerase/epimerase.
 
  
 0.672
GAP13142.1
Sugar kinase, ribokinase family; Belongs to the carbohydrate kinase PfkB family.
       0.556
fucI
L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.
       0.538
GAP12793.1
Protein containg Cupin domain.
  
    0.531
GAP15786.1
Uncharacterized conserved protein, containing double-stranded beta-helix domain.
  
    0.531
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
    
  0.519
tal-2
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
    
  0.519
GAP16020.1
Hypothetical protein.
  
 
 0.503
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.