STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13184.1DNA segregation ATPase FtsK/SpoIIIE. (1457 aa)    
Predicted Functional Partners:
GAP12634.1
Serine/threonine protein kinase.
  
 
 0.992
GAP14601.1
Protein kinase domain.
  
 
 0.992
GAP14544.1
Protein containg PAS domain S-box.
  
 0.937
GAP15949.1
Protein containg PAS domain S-box.
  
 0.937
GAP14910.1
Histidine kinase.
  
 
 0.934
GAP13585.1
Protein containg PAS domain S-box.
  
 
 0.927
GAP13881.1
ATPase.
   
 0.916
GAP15497.1
Protein containg PAS domain S-box.
  
 
 0.914
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
 0.911
GAP12367.1
Signal transduction histidine kinase.
    
 0.892
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.