STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13227.1Aspartate/tyrosine/aromatic aminotransferase. (482 aa)    
Predicted Functional Partners:
GAP12819.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
 
 0.933
GAP14141.1
Methionine synthase I.
  
 
 0.897
GAP14439.1
Glycine cleavage system T protein; Belongs to the GcvT family.
  
 
 0.881
GAP14140.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.850
GAP14149.1
Glutamate formiminotransferase.
   
 
  0.827
GAP13644.1
Aldehyde dehydrogenase, iron-sulfur subunit.
  
 
 0.789
GAP14859.1
Thioredoxin reductase.
 
 
 0.776
GAP13225.1
Hypothetical protein.
       0.773
GAP13226.1
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
       0.773
GAP14574.1
2-oxoacid:acceptor oxidoreductase, alpha subunit.
    
 0.760
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.