STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13245.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
GAP13246.1
Hypothetical protein.
       0.467
GAP13247.1
Type I restriction-modification system methyltransferase subunit.
       0.467
GAP13244.1
Hypothetical protein.
       0.454
GAP13248.1
Hypothetical protein.
       0.436
GAP13249.1
Superfamily II DNA/RNA helicase, SNF2 family.
       0.428
GAP13250.1
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster.
       0.428
GAP13243.1
Predicted transcriptional regulator, contains C-terminal CBS domains.
       0.418
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.