STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13399.1Protein containg SagB-type dehydrogenase domain. (249 aa)    
Predicted Functional Partners:
GAP15467.1
birA, biotin-[acetyl-CoA-carboxylase] ligase region.
  
    0.812
GAP13445.1
acyl-CoA synthetase.
   
   0.800
GAP16096.1
acyl-CoA synthetase.
   
   0.800
GAP15256.1
Dinucleotide-utilizing enzyme.
    
 0.793
GAP12631.1
ABC-type multidrug transport system, ATPase component.
  
  
 0.586
GAP12443.1
DinB superfamily.
  
    0.575
GAP12682.1
Lactoylglutathione lyase.
  
    0.575
GAP13226.1
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
  
 
 0.514
GAP14240.1
Conserved hypothetical protein, cofD-related; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
 
 0.512
GAP14707.1
LPPG:FO 2-phospho-L-lactate transferase.
  
 
 0.512
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.