STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13400.1Protein containg TPR repeat. (770 aa)    
Predicted Functional Partners:
GAP14197.1
Hypothetical protein.
   
 
 0.964
GAP14392.1
Membrane proteins related to metalloendopeptidases.
   
 
 0.964
GAP14828.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
 
 0.962
GAP12368.1
Histidine kinase.
 
 
 0.955
GAP12826.1
Protein containg TPR repeat.
 
 
 0.932
GAP14424.1
Signal transduction histidine kinase.
 
 
 0.927
GAP13402.1
Transposase.
 
     0.918
GAP12367.1
Signal transduction histidine kinase.
 
 
 0.911
GAP14767.1
Protein containg TPR repeat.
 
  
 0.904
GAP14906.1
Protein containg FOG: GAF domain.
 
 
 0.898
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.