STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13504.1ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family. (151 aa)    
Predicted Functional Partners:
GAP14140.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.929
GAP14141.1
Methionine synthase I.
    
 0.892
GAP14910.1
Histidine kinase.
  
 
 0.888
GAP12819.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
 
  
  0.840
GAP14439.1
Glycine cleavage system T protein; Belongs to the GcvT family.
    
  0.807
GAP13505.1
Acetyltransferases.
  
    0.794
GAP13506.1
Guanosine polyphosphate pyrophosphohydrolases/synthetases.
    
  0.783
GAP13503.1
L-2-amino-thiazoline-4-carboxylic acid hydrolase.
       0.773
GAP15497.1
Protein containg PAS domain S-box.
  
 
 0.768
GAP13585.1
Protein containg PAS domain S-box.
  
 
 0.757
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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