STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13515.1Four helix bundle protein. (174 aa)    
Predicted Functional Partners:
GAP14688.1
Type IV leader peptidase family.
  
  
 0.853
GAP14714.1
Competence protein ComEA helix-hairpin-helix repeat region.
  
  
 0.849
GAP12737.1
Predicted hydrolase.
  
  
 0.812
GAP13095.1
ComEC/Rec2-related protein.
  
  
 0.812
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.791
GAP12627.1
Predicted Rossmann fold nucleotide-binding protein.
  
  
 0.746
GAP14401.1
DNA protecting protein DprA.
  
  
 0.746
GAP12316.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
    0.735
GAP15027.1
Single-strand binding protein.
   
    0.735
GAP12980.1
Four helix bundle protein.
  
     0.732
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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