STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13546.1Hypothetical protein. (243 aa)    
Predicted Functional Partners:
GAP13547.1
Protein containg PglZ domain.
 
     0.952
GAP13552.1
Hypothetical protein.
 
     0.795
GAP13549.1
DNA methylase.
 
     0.793
GAP13534.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.688
GAP13412.1
Hypothetical protein.
  
     0.679
GAP12425.1
LPXTG-site transpeptidase.
  
     0.667
GAP13538.1
Replicative DNA helicase.
  
     0.659
GAP13238.1
Superfamily II DNA/RNA helicase, SNF2 family.
 
     0.655
GAP12917.1
Hypothetical protein.
  
     0.581
GAP12899.1
Hypothetical protein.
  
     0.554
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.