STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13674.1D-alanine-D-alanine ligase. (450 aa)    
Predicted Functional Partners:
GAP15467.1
birA, biotin-[acetyl-CoA-carboxylase] ligase region.
  
 0.997
GAP15606.1
Polyketide synthase module.
  
 
 0.995
GAP12819.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
 
 0.945
GAP15860.1
Pyruvate/oxaloacetate carboxyltransferase.
  
 
 0.931
GAP14574.1
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
 
  0.856
GAP13644.1
Aldehyde dehydrogenase, iron-sulfur subunit.
     
 0.854
GAP14859.1
Thioredoxin reductase.
     
 0.846
atpF
ATP synthase, F0 subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
   
   0.839
GAP13978.1
Fe-S oxidoreductase.
     
 0.838
GAP14054.1
Fe-S-cluster-containing hydrogenase components 1.
     
 0.830
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.