STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13704.1Methyl-viologen-reducing hydrogenase, delta subunit/4Fe-4S dicluster domain. (709 aa)    
Predicted Functional Partners:
GAP13705.1
Coenzyme F420-reducing hydrogenase, beta subunit.
 
 0.999
GAP13706.1
Glutamate synthase domain 3.
   
   0.999
GAP14054.1
Fe-S-cluster-containing hydrogenase components 1.
  
 0.999
GAP14055.1
Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.999
GAP14320.1
NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY.
 
 0.999
GAP14932.1
Coenzyme F420-reducing hydrogenase, gamma subunit.
 
 0.999
GAP15965.1
Coenzyme F420-reducing hydrogenase, gamma subunit.
 0.999
GAP12514.1
Protein containg 4Fe-4S binding domain.
 
 0.997
GAP15939.1
Sulfide dehydrogenase (flavoprotein) subunit SudA.
  
 0.987
GAP15964.1
Coenzyme F420-reducing hydrogenase, alpha subunit.
 
 
 0.985
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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