STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13816.1ABC transporter periplasmic binding protein, thiB subfamily. (360 aa)    
Predicted Functional Partners:
GAP13817.1
ABC-type Fe3+ transport system, permease component.
 
 
 0.996
GAP16054.1
ABC-type Fe3+ transport system, permease component.
 
 
 0.940
GAP13819.1
ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
  
 0.900
GAP13815.1
Thiamine diphosphokinase.
 
     0.765
GAP16053.1
ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
  
 0.638
GAP13837.1
Protein containg ParB-like nuclease domain.
  
     0.613
GAP15419.1
Transcriptional regulator.
  
     0.564
GAP13756.1
Protein containg molybdenum-pterin binding domain.
    
  0.543
GAP12975.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
    
  0.509
GAP15578.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
    
  0.509
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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