STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13868.1Protein containg PAS domain S-box. (578 aa)    
Predicted Functional Partners:
GAP14544.1
Protein containg PAS domain S-box.
  
 0.967
GAP15949.1
Protein containg PAS domain S-box.
 
  
 0.965
GAP15338.1
Protein containg PAS domain S-box.
 0.963
GAP15534.1
Protein containg PAS domain S-box.
 0.961
GAP13958.1
Protein containg diguanylate cyclase (GGDEF) domain.
 
  0.953
GAP15147.1
Protein containg diguanylate cyclase (GGDEF) domain.
 0.941
GAP14814.1
Protein containg PAS domain S-box.
 0.911
GAP13751.1
Protein containg PAS domain S-box.
 0.888
GAP13344.1
Protein containg diguanylate cyclase (GGDEF) domain.
 0.849
GAP12932.1
Protein containg diguanylate cyclase (GGDEF) domain.
 0.845
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.