Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GAP12578.1 | GAP12579.1 | LARV_00314 | LARV_00315 | Hypothetical protein. | Sulfate permease. | 0.990 |
GAP12578.1 | GAP14900.1 | LARV_00314 | LARV_02679 | Hypothetical protein. | Hypothetical protein. | 0.983 |
GAP12578.1 | sbcD | LARV_00314 | LARV_01642 | Hypothetical protein. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.974 |
GAP12579.1 | GAP12578.1 | LARV_00315 | LARV_00314 | Sulfate permease. | Hypothetical protein. | 0.990 |
GAP12579.1 | GAP14900.1 | LARV_00315 | LARV_02679 | Sulfate permease. | Hypothetical protein. | 0.983 |
GAP12579.1 | sbcD | LARV_00315 | LARV_01642 | Sulfate permease. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.974 |
GAP12628.1 | GAP13881.1 | LARV_00364 | LARV_01640 | ATP-dependent DNA helicase, RecQ family. | ATPase. | 0.999 |
GAP12628.1 | GAP14331.1 | LARV_00364 | LARV_02098 | ATP-dependent DNA helicase, RecQ family. | DNA polymerase elongation subunit. | 0.963 |
GAP12628.1 | GAP14900.1 | LARV_00364 | LARV_02679 | ATP-dependent DNA helicase, RecQ family. | Hypothetical protein. | 0.881 |
GAP12628.1 | dinG | LARV_00364 | LARV_01880 | ATP-dependent DNA helicase, RecQ family. | Exonuclease, DNA polymerase III, epsilon subunit family; 3'-5' exonuclease. | 0.987 |
GAP12628.1 | polA | LARV_00364 | LARV_01155 | ATP-dependent DNA helicase, RecQ family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
GAP12628.1 | recA | LARV_00364 | LARV_01987 | ATP-dependent DNA helicase, RecQ family. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.999 |
GAP12628.1 | sbcD | LARV_00364 | LARV_01642 | ATP-dependent DNA helicase, RecQ family. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.999 |
GAP12628.1 | topA | LARV_00364 | LARV_02172 | ATP-dependent DNA helicase, RecQ family. | DNA topoisomerase I, bacterial; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removi [...] | 0.999 |
GAP13881.1 | GAP12628.1 | LARV_01640 | LARV_00364 | ATPase. | ATP-dependent DNA helicase, RecQ family. | 0.999 |
GAP13881.1 | GAP14331.1 | LARV_01640 | LARV_02098 | ATPase. | DNA polymerase elongation subunit. | 0.982 |
GAP13881.1 | GAP14900.1 | LARV_01640 | LARV_02679 | ATPase. | Hypothetical protein. | 0.958 |
GAP13881.1 | dinG | LARV_01640 | LARV_01880 | ATPase. | Exonuclease, DNA polymerase III, epsilon subunit family; 3'-5' exonuclease. | 0.982 |
GAP13881.1 | polA | LARV_01640 | LARV_01155 | ATPase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
GAP13881.1 | recA | LARV_01640 | LARV_01987 | ATPase. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.994 |
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