STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13925.1Prephenate dehydrogenase. (324 aa)    
Predicted Functional Partners:
hisC
Histidinol-phosphate aminotransferase; Belongs to the imidazoleglycerol-phosphate dehydratase family.
  
 
 0.979
GAP12405.1
Aspartate/tyrosine/aromatic aminotransferase.
    
 0.854
GAP14995.1
Predicted amidophosphoribosyltransferase.
   
  
 0.848
GAP13926.1
Zn-dependent protease.
 
     0.845
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
  
    0.808
GAP13923.1
Adenine/guanine phosphoribosyltransferase.
  
    0.808
GAP13924.1
Predicted endonuclease containing a URI domain.
       0.806
GAP12784.1
Shikimate kinase.
  
 
 0.728
GAP13534.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.725
GAP14379.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.725
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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