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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP13929.1tRNA threonylcarbamoyl adenosine modification protein YeaZ. (222 aa)    
Predicted Functional Partners:
GAP13928.1
tRNA threonylcarbamoyl adenosine modification protein YjeE.
 
 
 0.999
tsaD
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
 
 0.997
GAP13931.1
uracil-DNA glycosylase, family 4.
  
    0.887
GAP15467.1
birA, biotin-[acetyl-CoA-carboxylase] ligase region.
 
    0.887
GAP13930.1
[SSU ribosomal protein S18P]-alanine acetyltransferase.
  
  
 0.853
GAP13927.1
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase.
  
    0.733
GAP14384.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3.
      0.653
GAP13933.1
Nucleoside-diphosphate-sugar epimerase.
       0.611
GAP13932.1
Nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.608
GAP13934.1
Membrane protein.
       0.608
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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