STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14012.1Heme ABC exporter, ATP-binding protein CcmA. (243 aa)    
Predicted Functional Partners:
GAP14013.1
ABC-type transport system.
  
  0.981
GAP15284.1
ABC-2 family transporter protein.
  
 0.978
GAP14014.1
ABC-type transport system.
 
  
  0.957
GAP12693.1
ABC-2 family transporter protein.
  
 0.922
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.833
GAP14011.1
Cytochrome c, mono- and diheme variants.
 
    0.828
atpA
Proton translocating ATP synthase, F1 alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.824
GAP12999.1
ABC-type multidrug transport system, permease component.
 
 
 0.822
GAP16029.1
ABC-type multidrug transport system, ATPase and permease component.
  
 
0.817
GAP13100.1
ABC-type multidrug transport system, ATPase and permease component.
  
 
0.812
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.