STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14048.1Hypothetical protein. (242 aa)    
Predicted Functional Partners:
GAP14618.1
Highly conserved protein containing a thioredoxin domain.
    
   0.954
GAP12570.1
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
  0.943
GAP14370.1
C-terminal peptidase; Belongs to the peptidase S41A family.
  
   0.894
GAP12613.1
Hypothetical protein.
  
 
 0.876
GAP13184.1
DNA segregation ATPase FtsK/SpoIIIE.
   
 
 0.824
GAP12764.1
Hypothetical protein.
  
 0.819
GAP13617.1
Protein containg RHS repeat-associated core domain.
  
 0.804
GAP15141.1
DNA segregation ATPase FtsK/SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.
    
   0.800
GAP15421.1
Hypothetical protein.
    
   0.800
GAP15498.1
DNA segregation ATPase FtsK/SpoIIIE.
    
   0.800
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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