STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14251.1Transporter, YbiR family. (409 aa)    
Predicted Functional Partners:
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
   
    0.566
GAP14252.1
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
       0.558
GAP14820.1
Rhodanese-related sulfurtransferase.
 
  
 0.512
GAP15977.1
Chloride channel protein EriC.
     
 0.486
GAP14584.1
Uncharacterized protein required for cytochrome oxidase assembly.
  
    0.475
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
    0.471
GAP15780.1
Transcriptional regulator.
 
  
 0.443
GAP14253.1
Hypothetical protein.
       0.427
GAP14141.1
Methionine synthase I.
     
 0.419
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.403
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.