STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14286.1Predicted membrane protein. (141 aa)    
Predicted Functional Partners:
GAP13201.1
Flp pilus assembly protein TadB.
  
     0.771
GAP13198.1
Hypothetical protein.
  
     0.732
GAP13197.1
Predicted ATPase.
  
    0.647
GAP13171.1
ATPase.
  
     0.606
GAP15593.1
Small GTP-binding protein.
  
     0.553
GAP15830.1
Histidine kinase.
  
     0.539
rsmH
16S rRNA (cytosine(1402)-N(4))-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.537
mraZ
MraZ protein; Belongs to the MraZ family.
       0.537
GAP13479.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
     0.527
GAP13412.1
Hypothetical protein.
  
     0.514
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.