STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14333.1ABC-type Co2+ transport system, permease component. (325 aa)    
Predicted Functional Partners:
GAP14334.1
Cobalt ABC transporter, permease protein CbiQ.
 
 0.999
GAP14335.1
ABC-type cobalt transport system, ATPase component.
 
 0.999
GAP12390.1
ABC-type cobalt transport system, permease component CbiQ.
  
 0.995
GAP12755.1
ABC-type cobalt transport system, permease component CbiQ.
  
 0.995
GAP13976.1
ABC-type cobalt transport system, permease component CbiQ.
  
 0.995
GAP15600.1
ABC-type cobalt transport system, permease component CbiQ.
  
 0.995
GAP15839.1
TIGR00268 family protein.
 
    0.863
GAP15841.1
NCAIR mutase (PurE)-related protein.
 
    0.863
GAP15838.1
TIGR00299 family protein; Belongs to the LarC family.
 
    0.736
GAP14332.1
Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family.
       0.577
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.