STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14380.1Protein containg cell envelope-related function transcriptional attenuator common domain. (343 aa)    
Predicted Functional Partners:
GAP14382.1
Histidine kinase.
       0.703
GAP14381.1
Predicted glycosyl hydrolase.
       0.678
GAP13117.1
Uncharacterized vancomycin resistance protein.
 
     0.598
GAP14714.1
Competence protein ComEA helix-hairpin-helix repeat region.
 
     0.597
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
     0.584
GAP14379.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
       0.496
GAP13913.1
Signal peptidase I, bacterial type; Belongs to the peptidase S26 family.
 
     0.478
GAP14240.1
Conserved hypothetical protein, cofD-related; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.478
GAP13942.1
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase.
 
  
 0.454
GAP15133.1
Bacterial cell division membrane protein; Belongs to the SEDS family.
 
  
 0.436
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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