STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14393.1Periplasmic component of the Tol biopolymer transport system. (634 aa)    
Predicted Functional Partners:
GAP12426.1
Protein containg conserved repeat domain.
  
 0.894
GAP12732.1
Regulator of chromosome condensation (RCC1) repeat.
  
 0.894
GAP14392.1
Membrane proteins related to metalloendopeptidases.
 
     0.838
GAP15385.1
Dihydroorotate dehydrogenase.
  
    0.764
GAP14213.1
Soluble lytic murein transglycosylase.
 
  
 0.759
GAP15361.1
Dolichyl-phosphate-mannose-protein mannosyltransferase/NHL repeat.
 
 
   0.719
GAP14243.1
Protein containg haem-binding domain.
  
   0.711
GAP14630.1
Hypothetical protein.
  
     0.707
GAP12717.1
Periplasmic component of the Tol biopolymer transport system.
  
     0.703
GAP15506.1
Periplasmic component of the Tol biopolymer transport system.
  
     0.687
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.