STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14407.1Isopentenyl phosphate kinase. (268 aa)    
Predicted Functional Partners:
GAP14408.1
Mevalonate kinase.
 
   
 0.904
GAP14980.1
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
  
 0.892
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
  0.886
GAP15072.1
Diphosphomevalonate decarboxylase.
     
 0.878
GAP14409.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
     
 0.827
GAP14406.1
Deoxyguanosinetriphosphate triphosphohydrolase, putative; Belongs to the dGTPase family. Type 2 subfamily.
       0.784
GAP13253.1
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.744
GAP12811.1
hydroxymethylglutaryl-CoA synthase.
  
   
 0.711
GAP14417.1
Protein containg Chlor_Arch_YYY domain.
 
     0.711
GAP14410.1
Hemolysin TlyA family protein.
       0.627
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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