STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14463.1Protein containg FOG: LysM repeat. (363 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.836
GAP14003.1
Competence/damage-inducible protein CinA C-terminal domain; Belongs to the CinA family.
   
 
  0.780
GAP13274.1
Hypothetical protein.
  
   0.750
GAP14331.1
DNA polymerase elongation subunit.
  
     0.735
GAP14437.1
Uridine kinase.
    
  0.708
GAP15364.1
Beta-lactamase class A.
  
  
  0.697
GAP13773.1
Methylase.
  
     0.695
GAP14128.1
Membrane proteins related to metalloendopeptidases.
  
 
  0.672
GAP12426.1
Protein containg conserved repeat domain.
 
 
 
 0.671
GAP14218.1
Uncharacterized protein conserved in bacteria.
  
     0.671
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.