STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14476.1Radical SAM additional 4Fe4S-binding SPASM domain. (459 aa)    
Predicted Functional Partners:
GAP14477.1
Radical SAM superfamily.
 
    
0.830
GAP14475.1
Hypothetical protein.
       0.823
GAP14478.1
Methylase.
 
     0.818
GAP14584.1
Uncharacterized protein required for cytochrome oxidase assembly.
   
 
  0.811
GAP14474.1
Hypothetical protein.
       0.762
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
   
 
  0.755
GAP14471.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.667
GAP14828.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
   
 0.608
moaA-2
Cyclic pyranopterin monophosphate synthase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
 
  
 0.589
GAP14561.1
Protein containg HD-GYP domain.
   
 0.580
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.