STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14507.1Sugar transferase. (230 aa)    
Predicted Functional Partners:
GAP13481.1
Capsular exopolysaccharide family.
 
 
 0.978
GAP14500.1
Glycosyltransferase.
    
 0.935
GAP13476.1
Predicted glycosyltransferases.
 
 
 0.933
GAP14506.1
Glycosyltransferase.
 
    0.879
GAP13953.1
Glycosyltransferase.
  
 
 0.825
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.807
GAP14503.1
Membrane protein.
 
  
 0.794
GAP14508.1
Protein containg FOG: GGDEF domain.
       0.786
GAP14402.1
Mannose-1-phosphate guanylyltransferase.
  
 
 0.779
GAP14505.1
Protein containg diguanylate cyclase (GGDEF) domain.
  
  
 0.735
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.