STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14589.1Radical SAM family uncharacterized protein. (637 aa)    
Predicted Functional Partners:
GAP14588.1
Radical SAM-linked protein.
    0.993
GAP15581.1
Protein containg V4R domain.
  
 
 0.908
GAP14587.1
rRNA methylase.
       0.772
GAP14585.1
Short-chain dehydrogenase of various substrate specificities; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.651
GAP14586.1
Putative regulatory protein, FmdB family.
       0.647
GAP13293.1
polyphosphate:AMP phosphotransferase.
   
    0.619
GAP13485.1
Polyphosphate kinase 2, PA0141 family.
   
    0.619
GAP14590.1
Dehydrogenase.
       0.607
GAP14591.1
Uncharacterized protein conserved in bacteria.
       0.602
GAP13730.1
4-hydroxybenzoate polyprenyltransferase.
   
 
 0.543
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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