STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14636.1Protoporphyrin IX magnesium-chelatase. (414 aa)    
Predicted Functional Partners:
GAP13419.1
Mg-chelatase subunit ChlD.
 0.999
GAP14635.1
uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.829
GAP14634.1
RNA methyltransferase, RsmD family.
       0.794
GAP14637.1
Predicted membrane protein.
       0.788
GAP14638.1
Nucleoside-diphosphate-sugar epimerase.
       0.788
GAP16012.1
Phytoene dehydrogenase.
 
 
 0.723
GAP14639.1
Uncharacterized protein conserved in bacteria.
       0.711
GAP12800.1
Phytoene dehydrogenase.
 
 
 0.700
GAP13730.1
4-hydroxybenzoate polyprenyltransferase.
  
  
 0.699
GAP12642.1
Protoporphyrinogen oxidase.
  
 
 0.639
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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