Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAP14712.1Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase. (460 aa)    
Predicted Functional Partners:
GAP14713.1
Predicted metal-dependent enzyme.
       0.816
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.706
GAP13978.1
Fe-S oxidoreductase.
   
  0.705
lysY
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of [LysW]- aminoadipate 6-phosphate to yield [LysW]-aminoadipate 6-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily.
  
 0.694
GAP13644.1
Aldehyde dehydrogenase, iron-sulfur subunit.
  
 
  0.693
GAP14715.1
Uncharacterized conserved protein.
 
     0.672
GAP14714.1
Competence protein ComEA helix-hairpin-helix repeat region.
       0.640
GAP14716.1
Protein containg uncharacterized domain HDIG.
       0.625
ybeY
Probable rRNA maturation factor YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.622
GAP13055.1
Dihydroorotate dehydrogenase.
  
 0.595
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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