STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP14738.1Hypothetical protein. (506 aa)    
Predicted Functional Partners:
GAP14735.1
Bacterial membrane protein YfhO.
       0.796
GAP14736.1
Hypothetical protein.
      
0.792
GAP14737.1
Bacterial membrane protein YfhO.
       0.792
rnc
Ribonuclease III, bacterial; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.792
GAP14734.1
MoxR-like ATPases.
       0.776
GAP14733.1
Uncharacterized conserved protein.
       0.774
GAP13055.1
Dihydroorotate dehydrogenase.
   
    0.638
GAP13697.1
Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
   
    0.638
GAP14799.1
Uncharacterized Fe-S center protein.
   
    0.638
GAP14927.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
   
    0.638
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.