STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fniIsopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (347 aa)    
Predicted Functional Partners:
GAP13978.1
Fe-S oxidoreductase.
  
 0.995
GAP14980.1
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.972
GAP15072.1
Diphosphomevalonate decarboxylase.
 
  
 0.960
GAP12615.1
FAD/FMN-containing dehydrogenases.
  
 0.959
GAP13380.1
FAD/FMN-containing dehydrogenases.
  
 0.959
GAP12819.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
    
 0.955
GAP14860.1
glycine/D-amino acid oxidase.
   
 
 0.946
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.933
GAP14487.1
Isocitrate dehydrogenase.
   
 
 0.924
GAP12676.1
Protein containg AAA ATPase domain.
 
 
  0.916
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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